DragonFly On-Line Manual Pages

PS_LAV(1)              DragonFly General Commands Manual             PS_LAV(1)

NAME
       ps_lav [-B] [-Z db_size] - plot an "lav" file in postscript.

DESCRIPTION
       ps_lav is a simple program to take "lav" format output from "lalign35"
       and produce postscript alignment plots (which look like "dot-plots").
       It was designed to work with the output of the lalign35 program, but
       should work with other lav output as well.

       -B     color alignment lines using the "bit" score.

       -Z db_size
              set the effective database size for an E()-value calculate to
              db_size, and color alignment lines using E()-values.  Requires
              bit scores in the lav ouput.

AUTHOR
       Bill Pearson
       wrp@virginia.EDU

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