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NEX2TEXT_TREE(1)      User Contributed Perl Documentation     NEX2TEXT_TREE(1)

NAME
       nex2text_tree.pl - Trees as strings

SYNOPSIS
        nex2text_tree.pl [options] [file ...]
        nex2text_tree.pl --tree_width 100 --otu_spacing 4 --demo
        nex2text_tree.pl -i input.nex -o text_string_tree.out --tree_width 100 --otu_spacing 4

OPTIONS
           -d or --demo                    Prints out a default tree to the STDOUT
           -h or --help                    Brief help message about the options
           -m or --manual                  Full documentation
           -i or --input <file_name>       Specify input NEXUS file
           -o or --output <file_name>      Specify output file (default: STDOUT)
           -w or --tree_width 30           Total width of the output tree string (default = 30) [Integer]
           -s or --otu_spacing 4           Vertical spacing betweein OTUs (default value = 4) [Integer]
           -V or --version                 Print version information and quit
           --verbose                       The parameters are also printed along with the tree.
           -c or --cladogram  normal       The parameters are also printed along with the tree. (options: 'normal' or 'accelarated')

DESCRIPTION
          B<nex2text_tree.pl> prgram will read the given input NEXUS file and converts the newick tree in the TreesBlock
          as string.

AUTHOR(S)
                 Vivek Gopalan (gopalan_vivek@yahoo.com)

METHODS

perl v5.20.2                      2006-08-24                  NEX2TEXT_TREE(1)