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hmmconvert(1)                    HMMER Manual                    hmmconvert(1)


NAME

       hmmconvert - convert profile file to a HMMER format


SYNOPSIS

       hmmconvert [options] <hmmfile>


DESCRIPTION

       The hmmconvert utility converts an input profile file to different
       HMMER formats.

       By default, the input profile can be in any HMMER format, including
       old/obsolete formats from HMMER2, ASCII or binary; the output profile
       is a current HMMER3 ASCII format.


OPTIONS

       -h     Help; print a brief reminder of command line usage and all
              available options.

       -a     Output profiles in ASCII text format. This is the default.

       -b     Output profiles in binary format.

       -2     Output in legacy HMMER2 ASCII text format, in ls (glocal) mode.
              This allows HMMER3 models to be converted back to a close
              approximation of HMMER2, for comparative studies.

       --outfmt <s>
              Output in a HMMER3 ASCII text format other then the most current
              one.  Valid choices for <s> are 3/b or 3/a.  The current format
              is 3/b, and this is the default. There is a slightly different
              format 3/a that was used in some alpha test code.


SEE ALSO

       See hmmer(1) for a master man page with a list of all the individual
       man pages for programs in the HMMER package.

       For complete documentation, see the user guide that came with your
       HMMER distribution (Userguide.pdf); or see the HMMER web page
       (@HMMER_URL@).


COPYRIGHT

       @HMMER_COPYRIGHT@
       p@HMMER_LICENSE@

       For additional information on copyright and licensing, see the file
       called COPYRIGHT in your HMMER source distribution, or see the HMMER
       web page (@HMMER_URL@).


AUTHOR

       Eddy/Rivas Laboratory
       Janelia Farm Research Campus
       19700 Helix Drive
       Ashburn VA 20147 USA
       http://eddylab.org

       "

HMMER @HMMER_VERSION@            @HMMER_DATE@                    hmmconvert(1)

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