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BP_TREE2PAG(1)        User Contributed Perl Documentation       BP_TREE2PAG(1)

NAME

bp_tree2pag - convert Bio::TreeIO parseable format trees to pagel format

SYNOPSIS

bp_tree2pag -if nexus -i file.nexus > file.pag # OR pipe in through STDIN, and use newick format instead cat file.newick | bp_tree2pag -if newick > file.nh # OR specify an output and input bp_tree2pag -o file.pag -i file.newick

DESCRIPTION

Convert TreeIO parseable files into Pagel format tree files. Be warned that pagel format only really supports a single tree per file so. Also Pagel parsing is not yet available in bioperl. perl v5.20.2 2015-09-15 BP_TREE2PAG(1)

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