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BP_SPLIT_SEQ(1)       User Contributed Perl Documentation      BP_SPLIT_SEQ(1)


NAME

       bp_split_seq - splits a sequence into equal sized chunks with an
       optional
                   overlapping range


SYNOPSIS

       bp_split_seq -c 10000 [-o 1000] [-i] -f seq.in


DESCRIPTION

       The script will split sequences into chunks

       Mandatory Options:

         -c  Desired length of the resulting sequences.
         -f  Input file (must be FASTA format).

       Special Options:

         -o  Overlapping range between the resulting sequences.
         -i  Create an index file with the resulting sequence files. This is
             useful if you want to pass this list as input arguments into
             another programs (i.e. CLUSTAL, HMMER, etc.).


FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs and their resolution. Bug reports can be submitted via the
       web:

         https://github.com/bioperl/bioperl-live/issues


AUTHORS

         Ewan Birney E<lt>birney-at-ebi.ac.ukE<gt>
         Mauricio Herrera Cuadra E<lt>mauricio at open-bio.orgE<gt>
         (some enhancements)

perl v5.20.2                      2015-09-15                   BP_SPLIT_SEQ(1)

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