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BP_SEARCH2BSML(1)     User Contributed Perl Documentation    BP_SEARCH2BSML(1)


NAME

       search2bsml - Turn SearchIO parseable reports(s) into a BSML report


SYNOPSIS

       Usage:
         search2bsml [-o outputfile] [-f reportformat] [-i inputfilename]  OR
       file1 file2 ..


DESCRIPTION

       This script will turn a protein Search report (BLASTP, FASTP, SSEARCH,
       AXT, WABA, SIM4) into a BSML File.

       The options are:

          -i infilename        - (optional) inputfilename, will read
                                 either ARGV files or from STDIN
          -o filename          - the output filename [default STDOUT]
          -f format            - search result format (blast, fasta,waba,axt)
                                 (ssearch is fasta format). default is blast.
          -h                   - this help menu

       Additionally specify the filenames you want to process on the command-
       line.  If no files are specified then STDIN input is assumed.  You
       specify this by doing: search2gff < file1 file2 file3


AUTHOR

       Jason Stajich, jason-at-bioperl-dot-org

perl v5.20.2                      2015-09-15                 BP_SEARCH2BSML(1)

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