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BP_PARSE_HMMSEARCH(1)                      User Contributed Perl Documentation


NAME

       bp_parse_hmmsearch - parse single/multiple HMMSEARCH results file(s)
       with
                         different output options


SYNOPSIS

       bp_parse_hmmsearch [--po] [--ps] -s hmmsearch_file

       bp_parse_hmmsearch [--po] [--ps] -m index_file


DESCRIPTION

   Mandatory Options:
         -s  HMMSEARCH file to parse.
         -m  INDEX file that contains a list of HMMSEARCH files for multiple
             parsing.

   Special Options:
         --po    Print only the hits that have positive scores.
         --ps    Print the total of positive scores found.
         --help  Show this documentation.


FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list. Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs and their resolution. Bug reports can be submitted via the
       web:

         https://github.com/bioperl/bioperl-live/issues


AUTHOR

         Mauricio Herrera Cuadra <mauricio at open-bio.org>

perl v5.20.2                      2015-09-15             BP_PARSE_HMMSEARCH(1)

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