DragonFly On-Line Manual Pages

BP_MRTRANS(1)         User Contributed Perl Documentation        BP_MRTRANS(1)

NAME
       bp_mrtrans - implement a transformer of alignments from protein to mrna
       coordinates

SYNOPSIS
       Usage:
         bp_mrtrans -i inputfile -o outputfile [-if input format] [-of output
       format] [-s cDNA sequence database]  [-sf cDNA sequence format] [-h]

DESCRIPTION
       This script will convert a protein alignment back into a cDNA.  Loosely
       based on Bill Pearson's mrtrans.

       The options are:

          -o filename          - the output filename [default STDOUT]
          -of format           - output sequence format
                                 (multiple sequence alignment)
                                 [default phylip]
          -i filename          - the input filename [required]
          -if format           - input sequence format
                                 (multiple sequence alignment)
                                 [ default clustalw]
          -s --seqdb filename  - the cDNA sequence database file
          -sf --seqformat      - the cDNA seq db format (flatfile sequence format)
          -h                   - this help menu

AUTHOR
       Jason Stajich, jason-at-bioperl-dot-org

perl v5.20.2                      2015-09-15                     BP_MRTRANS(1)