DragonFly On-Line Manual Pages

BP_MAKE_MRNA_PROTEIN(1)                    User Contributed Perl Documentation

NAME
       bp_make_mrna_protein - Convert an input mRNA/cDNA sequence into protein

DESCRIPTION
       Convert an input mRNA/cDNA sequence into protein using translate()

         -f/--frame           Specifies frame [0,1,2]

       One can also specify:

         -t/--terminator      Stop Codon character (defaults to '*')
         -u/--unknown         Unknown Protein character (defaults to 'X')
         -cds/--fullcds       Expected Full CDS (with start and Stop codon)
         -throwOnError        Throw error if no Full CDS (defaults to 0)
         -if/--format         Input format (defaults to FASTA/Pearson)
         -of/--format         Output format (defaults to FASTA/Pearson)
         -o/--output          Output Filename (defaults to STDOUT)
         -i/--input           Input Filename (defaults to STDIN)
         -ct/--codontable     Codon table to use (defaults to '1')

       See Bio::PrimarySeq for more information on codon tables and the
       translate() method

AUTHOR - Jason Stajich
         Email jason-at-bioperl-dot-org

perl v5.20.2                      2015-09-15           BP_MAKE_MRNA_PROTEIN(1)