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BP_LOCAL_TAXONOMYDB_QUERY(1)               User Contributed Perl Documentation

NAME
       bp_local_taxonomydb_query - query a local TaxonomyDB for species or
       taxonid

DESCRIPTION
       This script provides an example implementation of access to a local
       Taxonomy database implemented with Berkeley DB (DB_File module is
       needed).

       Usage:

        bp_local_taxonomydb_query.PLS: [-v] --nodes nodes.dmp --names names.dmp "Genus1 species1" "Genus2 species2"

       Providing the nodes.dmp and names.dmp files from the NCBI Taxonomy dump
       (see Bio::DB::Taxonomy::flatfile for more info) is only necessary on
       the first time running.  This will create the local indexes and may
       take quite a long time.  However once created, these indexes will allow
       fast access for species to taxon id OR taxon id to species name
       lookups.

perl v5.20.2                      2015-09-15      BP_LOCAL_TAXONOMYDB_QUERY(1)