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BP_HMMER_TO_TABLE(1)  User Contributed Perl Documentation BP_HMMER_TO_TABLE(1)

NAME
       bp_hmmer_to_table  - turn HMMER output into tabular format

SYNOPSIS
        bp_hmmer_to_table [-e evaluefilter] [-b bitscorefilter] [--header] [-o outfile] inputfile1 inputfile2 ...

DESCRIPTION
       Command line options:
         -e/--evalue   evalue    -- filter by evalue
         -b/--bitscore bitscore  -- filter by bitscore
         --header                -- boolean flag to print column header
         -o/--out                -- optional outputfile to write data,
                                    otherwise will write to STDOUT
         -h/--help               -- show this documentation

       Not technically a SearchIO script as this doesn't use any Bioperl
       components but is a useful and fast.  The output is tabular output.

         query sequence/domain (these are flip-flopped for hmmsearch / hmmpfam)
         query start
         query end
         domain/sequence name or PFAM accession
         hit start
         hit end
         score
         e-value
         domain/sequence name (these are flip-flopped for hmmsearch / hmmpfam)

AUTHOR - Jason Stajich
       Jason Stajich jason_at_bioperl-dot-org

perl v5.20.2                      2015-09-15              BP_HMMER_TO_TABLE(1)