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BP_HETEROGENEITY_TEST(1)                   User Contributed Perl Documentation


NAME

       bp_heterogeneity_test - a test for distinguishing between selection and
       population expansion.


SYNOPSIS

       heterogenetity_test -mut_1/--mutsyn synonymous_mut_count
       -mut_2/--mutnon nonsyn_mut_count -s/--smaplesize sample_size
       [-i/--iterations iterations] [-o/--observed observed_D] [-v/--verbose]
       [--silent ] [-m/--method tajimaD or fuD] [--precision]

   DESCRIPTION
       This is an implementation of the Heterogenetity test as described in
       Hahn MW, Rausher MD, and Cunningham CW. 2002. Genetics 161(1):11-20.

   OPTIONS
        Options in brackets above are optional

        -s or --samplesize samplesize
        -mut_1 or --mutsyn synonymous mutation count
        -mut_2 or --mutnon nonsynonmous mutation count
        -i or --iterations number of iterations
        -o or --observed   observed D
        -m or --method     tajimaD or fuD  for Tajima's D or Fu and Li's D
        -v or --verbose    print out extra verbose messages
        --silent           Be extra quiet
        --precision        Level of precision - specify the number of digits
                          (default 4)

   AUTHOR Matthew Hahn <matthew.hahn-at-duke.edu>
       For more information contact:

       Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich
       <jason-at-bioperl-dot-org>

perl v5.20.2                      2015-09-15          BP_HETEROGENEITY_TEST(1)

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