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BP_GENERATE_HISTOGRAM(1)                   User Contributed Perl Documentation


NAME

       bp_generate_histogram.pl -- Generate a histogram of Bio::DB::GFF
       features


SYNOPSIS

         bp_generate_histogram.pl -d gadfly variation gene:curated


DESCRIPTION

       Use this utility to generate feature density histograms from
       Bio::DB::GFF databases.  The result is a GFF data file that is suitable
       for loading with load_gff.pl.

   OPTIONS
       The following options are recognized:

         Option        Description
         ------        -----------

          --dsn        <dsn>       Data source (default dbi:mysql:test)
          --adaptor    <adaptor>   Schema adaptor (default dbi::mysqlopt)
          --user       <user>      Username for mysql authentication
          --pass       <password>  Password for mysql authentication
          --aggregator <list>      Comma-separated list of aggregators


BUGS

       Please report them.


SEE ALSO

       Bio::DB::GFF


AUTHOR

       Lincoln Stein <lstein@cshl.org>

       Copyright (c) 2001 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it
       under the same terms as Perl itself.  See DISCLAIMER.txt for
       disclaimers of warranty.

perl v5.20.2                      2015-09-15          BP_GENERATE_HISTOGRAM(1)

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