DragonFly On-Line Manual Pages

BP_GCCALC(1)          User Contributed Perl Documentation         BP_GCCALC(1)

NAME
       bp_gccalc - GC content of nucleotide sequences

SYNOPSIS
         bp_gccalc [-f/--format FORMAT] [-h/--help] filename
         or
         bp_gccalc [-f/--format FORMAT] < filename
         or
         bp_gccalc [-f/--format FORMAT] -i filename

DESCRIPTION
       This scripts prints out the GC content for every nucleotide sequence
       from the input file.

OPTIONS
       The default sequence format is fasta.

       The sequence input can be provided using any of the three methods:

       unnamed argument
            bp_gccalc filename

       named argument
            bp_gccalc -i filename

       standard input
            bp_gccalc < filename

FEEDBACK
   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs and their resolution. Bug reports can be submitted via the
       web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich
       Email jason@bioperl.org

HISTORY
       Based on script code (see bottom) submitted by cckim@stanford.edu

       Submitted as part of bioperl script project 2001/08/06

perl v5.20.2                      2015-09-15                      BP_GCCALC(1)