DragonFly On-Line Manual Pages
BP_EXTRACT_FEATURE_SEQ(1) User Contributed Perl Documentation
NAME
bp_extract_feature_seq - extract the corresponding sequence for a
specified feature type
SYNOPSIS
bp_extract_feature_seq [--format FORMAT] [--feature CDS] [--output
FILE] [--input] FILE
DESCRIPTION
This script will extract the sequence for all the features you specify.
OPTIONS
-i, --input
Specifies the sequence file to be read.
--format
Format of the file specifed by --input. If not given, it will try
to guess the correct format from the file extension.
--feature
Feature to be extracted. By default, it extracts the CDS feature.
-o, --output
File where the extracted features will be saved. If not specified,
STDOUT is used.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
L<bioperl-l@bioperl.org> - General discussion
L<http://bioperl.org/wiki/Mailing_lists> - About the mailing lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of
the bugs and their resolution. Bug reports can be submitted via email
or the web:
L<https://github.com/bioperl/bioperl-live/issues>
AUTHOR
Jason Stajich <jason-at-bioperl-dot-org>
perl v5.20.2 2015-09-15 BP_EXTRACT_FEATURE_SEQ(1)