DragonFly On-Line Manual Pages

BP_DOWNLOAD_QUERY_GENBANK(1)               User Contributed Perl Documentation

NAME
       bp_download_query_genbank - script to query Genbank and retrieve
       records

USAGE
        bp_download_query_genbank --query "Neurospora[ORGN]" --db nucest -o Ncrassa_ESTs.fa --format fasta

        bp_download_query_genbank --queryfile 'filewithquery' --db nucest -o Ncrassa_ESTs.fa --format fasta

   Other options
        Provide ONE of:

         -q --query query string OR
         --queryfile profile file with query OR
         --gi --gis --gifile file with list of GIs to download

        Database type:

        -d --db database (nucleotide [default], nucest, protein, )

        -o --out --outfile output file (results are displayed on screen otherwise)
        -f --format sequence file output format (fasta by default)
        -v --verbose debugging output

   Query options
        --maxids maximum number of IDs to retrieve in a set (100 at a time by default)
        --reldate
        --maxdate maxdate for a record
        --mindate minimum date for record
        --datetype edat or mdat (entered or modified)

AUTHOR Jason Stajich
       Jason Stajich, jason-AT-bioperl.org

perl v5.20.2                      2015-09-15      BP_DOWNLOAD_QUERY_GENBANK(1)