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BP_CHAOS_PLOT(1)      User Contributed Perl Documentation     BP_CHAOS_PLOT(1)


NAME

       bp_chaos_plot - a chaos plot from DNA and RNA sequences


SYNOPSIS

         bp_chaos_plot.pl -i/--input=INPUTFILE -f/--format=SEQFORMAT
               -o/--output=OUTPUTFILE -g/--graphics=GRAPHIC FORMAT
               -w/--width=WIGHT -h/--height=HEIGHT


DESCRIPTION

       This scripts generates image files using GD image library to visualize
       nucleotide sequences using chaos plot.


OPTIONS

       Valid graphics formats are currently gd, gd2, png, wbmp, jpeg and gif.

       The default size of the image file is 600x400.

       The sequence input can be provided using any of the three methods:

       unnamed argument
            bp_chaos_plot filename

       named argument
            bp_chaos_plot -i filename

       standard input
            bp_chaos_plot < filename


FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other
       Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs and their resolution. Bug reports can be submitted via the
       web:

         https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich
       Email jason@bioperl.org


HISTORY

       This code is based on EMBOSS C code for chaos.c by Ian Longden.
       Included are documentation from EMBOSS code:

       Chaos produces a chaos plot.  The original application is part of the
       ACEDB genome database package, written by ** Richard Durbin (MRC LMB,
       UK) rd@mrc-lmba.cam.ac.uk, and Jean Thierry-Mieg (CRBM du CNRS, France)
       mieg@crbm1.cnusc.fr

perl v5.20.2                      2015-09-15                  BP_CHAOS_PLOT(1)

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